IL_1NJM_096

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GCGUAG*CC

Length

8 nucleotides

Bulged bases

1NJM|1|0|G|2095, 1NJM|1|0|U|2096, 1NJM|1|0|A|2097

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJM_096 not in the Motif Atlas

Geometric match to IL_5TBW_119

Geometric discrepancy: 0.28

The information below is about IL_5TBW_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

1NJM|1|0|G|2093
1NJM|1|0|C|2094
1NJM|1|0|G|2095
1NJM|1|0|U|2096
1NJM|1|0|A|2097
1NJM|1|0|G|2103
*
1NJM|1|0|C|2161
1NJM|1|0|C|2162

Current chains

Chain 0

23S ribosomal RNA

Nearby chains