IL_1NJM_119

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

1NJM|1|0|A|2745

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJM_119 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.2172

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

1NJM|1|0|G|2717
1NJM|1|0|A|2718
1NJM|1|0|U|2719
1NJM|1|0|A|2720
1NJM|1|0|A|2721
1NJM|1|0|C|2722
*
1NJM|1|0|G|2742
1NJM|1|0|G|2743
1NJM|1|0|A|2744
1NJM|1|0|A|2745
1NJM|1|0|G|2746
1NJM|1|0|C|2747

Current chains

Chain 0

23S ribosomal RNA

Nearby chains