IL_1NJM_123

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGUUAAG*CGAAAAUGAUCGGGGC

Length

23 nucleotides

Bulged bases

1NJM|1|0|U|1037, 1NJM|1|0|A|1138

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJM_123 not in the Motif Atlas

Geometric match to IL_7A0S_037

Geometric discrepancy: 0.2975

The information below is about IL_7A0S_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50715.4

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

Number of instances in this motif group

4

Unit IDs

1NJM|1|0|G|1035
1NJM|1|0|G|1036
1NJM|1|0|U|1037
1NJM|1|0|U|1038
1NJM|1|0|A|1039
1NJM|1|0|A|1040
1NJM|1|0|G|1041
*
1NJM|1|0|C|1135
1NJM|1|0|G|1136
1NJM|1|0|A|1137
1NJM|1|0|A|1138
1NJM|1|0|A|1139
1NJM|1|0|A|1140
1NJM|1|0|U|1141
1NJM|1|0|G|1142
1NJM|1|0|A|1143
1NJM|1|0|U|1144
1NJM|1|0|C|1145
1NJM|1|0|G|1146
1NJM|1|0|G|1147
1NJM|1|0|G|1148
1NJM|1|0|G|1149
1NJM|1|0|C|1150

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L16