IL_1NJM_125

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UUGAAAC*GCGGAGGA

Length

15 nucleotides

Bulged bases

1NJM|1|0|G|742

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJM_125 not in the Motif Atlas

Geometric match to IL_8VTW_001

Geometric discrepancy: 0.239

The information below is about IL_8VTW_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.7

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

1NJM|1|0|U|715
1NJM|1|0|U|716
1NJM|1|0|G|717
1NJM|1|0|A|718
1NJM|1|0|A|719
1NJM|1|0|A|720
1NJM|1|0|C|721
*
1NJM|1|0|G|736
1NJM|1|0|C|737
1NJM|1|0|G|738
1NJM|1|0|G|739
1NJM|1|0|A|740
1NJM|1|0|G|741
1NJM|1|0|G|742
1NJM|1|0|A|743

Current chains

Chain 0

23S ribosomal RNA

Nearby chains