IL_1NJM_126

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GCGGAGAAGC*GUGGAGC

Length

17 nucleotides

Bulged bases

1NJM|1|0|G|1223, 1NJM|1|0|A|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJM|1|0|G|1220
1NJM|1|0|C|1221
1NJM|1|0|G|1222
1NJM|1|0|G|1223
1NJM|1|0|A|1224
1NJM|1|0|G|1225
1NJM|1|0|A|1226
1NJM|1|0|A|1227
1NJM|1|0|G|1228
1NJM|1|0|C|1229
*
1NJM|1|0|G|1246
1NJM|1|0|U|1247
1NJM|1|0|G|1248
1NJM|1|0|G|1249
1NJM|1|0|A|1250
1NJM|1|0|G|1251
1NJM|1|0|C|1252

Current chains

Chain 0

23S ribosomal RNA

Nearby chains