IL_1NJM_129

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGGACG*CCAAGAAAAGC

Length

17 nucleotides

Bulged bases

1NJM|1|0|A|1441, 1NJM|1|0|C|1442, 1NJM|1|0|A|1582, 1NJM|1|0|A|1583

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJM|1|0|G|1438
1NJM|1|0|G|1439
1NJM|1|0|G|1440
1NJM|1|0|A|1441
1NJM|1|0|C|1442
1NJM|1|0|G|1443
*
1NJM|1|0|C|1580
1NJM|1|0|C|1581
1NJM|1|0|A|1582
1NJM|1|0|A|1583
1NJM|1|0|G|1584
1NJM|1|0|A|1585
1NJM|1|0|A|1586
1NJM|1|0|A|1587
1NJM|1|0|A|1588
1NJM|1|0|G|1589
1NJM|1|0|C|1590

Current chains

Chain 0

23S ribosomal RNA

Nearby chains