IL_1NJM_134

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GCGAAAUUCCUUG*CCUGCAC

Length

20 nucleotides

Bulged bases

1NJM|1|0|U|1927, 1NJM|1|0|U|1946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJM|1|0|G|1916
1NJM|1|0|C|1917
1NJM|1|0|G|1918
1NJM|1|0|A|1919
1NJM|1|0|A|1920
1NJM|1|0|A|1921
1NJM|1|0|U|1922
1NJM|1|0|U|1923
1NJM|1|0|C|1924
1NJM|1|0|C|1925
1NJM|1|0|U|1926
1NJM|1|0|U|1927
1NJM|1|0|G|1928
*
1NJM|1|0|C|1944
1NJM|1|0|C|1945
1NJM|1|0|U|1946
1NJM|1|0|G|1947
1NJM|1|0|C|1948
1NJM|1|0|A|1949
1NJM|1|0|C|1950

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 5

tRNA acceptor stem mimic