IL_1NJM_146

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGCG*CACAUGC

Length

11 nucleotides

Bulged bases

1NJM|1|0|C|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJM|1|0|G|1495
1NJM|1|0|G|1496
1NJM|1|0|C|1497
1NJM|1|0|G|1498
*
1NJM|1|0|C|1522
1NJM|1|0|A|1523
1NJM|1|0|C|1524
1NJM|1|0|A|1525
1NJM|1|0|U|1526
1NJM|1|0|G|1527
1NJM|1|0|C|1528

Current chains

Chain 0

23S ribosomal RNA

Nearby chains