IL_1NJN_021

3D structure

PDB id

1NJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UU*GGA

Length

5 nucleotides

Bulged bases

1NJN|1|0|G|742

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJN_021 not in the Motif Atlas

Homologous match to IL_4WF9_023

Geometric discrepancy: 0.317

The information below is about IL_4WF9_023

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

76

Unit IDs

1NJN|1|0|U|715
1NJN|1|0|U|716
*
1NJN|1|0|G|741
1NJN|1|0|G|742
1NJN|1|0|A|743

Current chains

Chain 0

23S ribosomal RNA

Nearby chains