IL_1NJN_066

3D structure

PDB id

1NJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGCGA*UCACAUGC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJN|1|0|G|1495
1NJN|1|0|G|1496
1NJN|1|0|C|1497
1NJN|1|0|G|1498
1NJN|1|0|A|1499
*
1NJN|1|0|U|1521
1NJN|1|0|C|1522
1NJN|1|0|A|1523
1NJN|1|0|C|1524
1NJN|1|0|A|1525
1NJN|1|0|U|1526
1NJN|1|0|G|1527
1NJN|1|0|C|1528

Current chains

Chain 0

23S ribosomal RNA

Nearby chains