IL_1NJN_075

3D structure

PDB id

1NJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UGCCAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

1NJN|1|0|G|1790, 1NJN|1|0|C|1792, 1NJN|1|0|C|1808, 1NJN|1|0|U|1812

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJN_075 not in the Motif Atlas

Homologous match to IL_4WF9_069

Geometric discrepancy: 0.3402

The information below is about IL_4WF9_069

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

1NJN|1|0|U|1789
1NJN|1|0|G|1790
1NJN|1|0|C|1791
1NJN|1|0|C|1792
1NJN|1|0|A|1793
1NJN|1|0|A|1794
1NJN|1|0|C|1795
*
1NJN|1|0|G|1805
1NJN|1|0|G|1806
1NJN|1|0|A|1807
1NJN|1|0|C|1808
1NJN|1|0|G|1809
1NJN|1|0|U|1810
1NJN|1|0|A|1811
1NJN|1|0|U|1812
1NJN|1|0|A|1813

Current chains

Chain 0

23S ribosomal RNA

Nearby chains