IL_1NJN_129

3D structure

PDB id

1NJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGGACG*CCAAGAAAAGC

Length

17 nucleotides

Bulged bases

1NJN|1|0|A|1441, 1NJN|1|0|C|1442, 1NJN|1|0|A|1582, 1NJN|1|0|A|1583

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJN|1|0|G|1438
1NJN|1|0|G|1439
1NJN|1|0|G|1440
1NJN|1|0|A|1441
1NJN|1|0|C|1442
1NJN|1|0|G|1443
*
1NJN|1|0|C|1580
1NJN|1|0|C|1581
1NJN|1|0|A|1582
1NJN|1|0|A|1583
1NJN|1|0|G|1584
1NJN|1|0|A|1585
1NJN|1|0|A|1586
1NJN|1|0|A|1587
1NJN|1|0|A|1588
1NJN|1|0|G|1589
1NJN|1|0|C|1590

Current chains

Chain 0

23S ribosomal RNA

Nearby chains