IL_1NJN_136

3D structure

PDB id

1NJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CAA*UGUAG

Length

8 nucleotides

Bulged bases

1NJN|1|0|U|2298, 1NJN|1|0|A|2299

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJN_136 not in the Motif Atlas

Geometric match to IL_8VTW_081

Geometric discrepancy: 0.2973

The information below is about IL_8VTW_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

1NJN|1|0|C|2276
1NJN|1|0|A|2277
1NJN|1|0|A|2278
*
1NJN|1|0|U|2296
1NJN|1|0|G|2297
1NJN|1|0|U|2298
1NJN|1|0|A|2299
1NJN|1|0|G|2300

Current chains

Chain 0

23S ribosomal RNA

Nearby chains