IL_1NJN_143

3D structure

PDB id

1NJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGUG*CUC

Length

7 nucleotides

Bulged bases

1NJN|1|0|G|752

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJN_143 not in the Motif Atlas

Homologous match to IL_9DFE_020

Geometric discrepancy: 0.4547

The information below is about IL_9DFE_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

26

Unit IDs

1NJN|1|0|G|751
1NJN|1|0|G|752
1NJN|1|0|U|753
1NJN|1|0|G|754
*
1NJN|1|0|C|769
1NJN|1|0|U|770
1NJN|1|0|C|771

Current chains

Chain 0

23S ribosomal RNA

Nearby chains