IL_1NJO_033

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJO_033 not in the Motif Atlas

Geometric match to IL_7A0S_029

Geometric discrepancy: 0.3719

The information below is about IL_7A0S_029

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_16301.2

Basepair signature

cWW-cWS-tWH-R-L-R-cWW

Number of instances in this motif group

10

Unit IDs

1NJO|1|0|G|877
1NJO|1|0|C|878
1NJO|1|0|A|879
1NJO|1|0|C|880
1NJO|1|0|U|881
*
1NJO|1|0|A|921
1NJO|1|0|A|922
1NJO|1|0|A|923
1NJO|1|0|C|924

Current chains

Chain 0

23S ribosomal RNA

Nearby chains