IL_1NJO_053

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJO_053 not in the Motif Atlas

Homologous match to IL_7RQB_049

Geometric discrepancy: 0.2077

The information below is about IL_7RQB_049

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

1NJO|1|0|A|1275
1NJO|1|0|U|1276
1NJO|1|0|G|1277
1NJO|1|0|A|1278
1NJO|1|0|G|1279
1NJO|1|0|U|1280
1NJO|1|0|A|1281
1NJO|1|0|A|1282
*
1NJO|1|0|U|1994
1NJO|1|0|G|1995
1NJO|1|0|A|1996
1NJO|1|0|A|1997
1NJO|1|0|A|1998
1NJO|1|0|U|1999
1NJO|1|0|U|2000

Current chains

Chain 0

23S ribosomal RNA

Nearby chains