IL_1NJO_054

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGAAG*CGC

Length

8 nucleotides

Bulged bases

1NJO|1|0|G|1345

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJO_054 not in the Motif Atlas

Homologous match to IL_7A0S_047

Geometric discrepancy: 0.3486

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

1NJO|1|0|G|1332
1NJO|1|0|G|1333
1NJO|1|0|A|1334
1NJO|1|0|A|1335
1NJO|1|0|G|1336
*
1NJO|1|0|C|1344
1NJO|1|0|G|1345
1NJO|1|0|C|1346

Current chains

Chain 0

23S ribosomal RNA

Nearby chains