IL_1NJO_073

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGUAAC*GAAGAAG

Length

13 nucleotides

Bulged bases

1NJO|1|0|G|1716

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJO_073 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.2992

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

1NJO|1|0|C|1703
1NJO|1|0|G|1704
1NJO|1|0|U|1705
1NJO|1|0|A|1706
1NJO|1|0|A|1707
1NJO|1|0|C|1708
*
1NJO|1|0|G|1713
1NJO|1|0|A|1714
1NJO|1|0|A|1715
1NJO|1|0|G|1716
1NJO|1|0|A|1717
1NJO|1|0|A|1718
1NJO|1|0|G|1719

Current chains

Chain 0

23S ribosomal RNA

Nearby chains