IL_1NJO_086

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GACGA*UCUAUC

Length

11 nucleotides

Bulged bases

1NJO|1|0|C|2038, 1NJO|1|0|C|2591, 1NJO|1|0|U|2592

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJO|1|0|G|2036
1NJO|1|0|A|2037
1NJO|1|0|C|2038
1NJO|1|0|G|2039
1NJO|1|0|A|2040
*
1NJO|1|0|U|2590
1NJO|1|0|C|2591
1NJO|1|0|U|2592
1NJO|1|0|A|2593
1NJO|1|0|U|2594
1NJO|1|0|C|2595

Current chains

Chain 0

23S ribosomal RNA

Nearby chains