IL_1NJO_105

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUGA*UGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJO_105 not in the Motif Atlas

Geometric match to IL_7RQB_093

Geometric discrepancy: 0.2879

The information below is about IL_7RQB_093

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

8

Unit IDs

1NJO|1|0|C|2435
1NJO|1|0|U|2436
1NJO|1|0|G|2437
1NJO|1|0|A|2438
*
1NJO|1|0|U|2472
1NJO|1|0|G|2473
1NJO|1|0|G|2474

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 5

RNA ACC(Puromycin)