IL_1NJO_109

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

1NJO|1|0|G|2555, 1NJO|1|0|A|2556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJO_109 not in the Motif Atlas

Geometric match to IL_7RQB_097

Geometric discrepancy: 0.1778

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

1NJO|1|0|C|2489
1NJO|1|0|U|2490
1NJO|1|0|C|2491
*
1NJO|1|0|G|2553
1NJO|1|0|C|2554
1NJO|1|0|G|2555
1NJO|1|0|A|2556
1NJO|1|0|G|2557

Current chains

Chain 0

23S ribosomal RNA

Nearby chains