IL_1NJO_125

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGUUAAG*CGAAAAUGAUCGGGGC

Length

23 nucleotides

Bulged bases

1NJO|1|0|U|1037, 1NJO|1|0|A|1138

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJO_125 not in the Motif Atlas

Geometric match to IL_7A0S_037

Geometric discrepancy: 0.2975

The information below is about IL_7A0S_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50715.4

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

Number of instances in this motif group

4

Unit IDs

1NJO|1|0|G|1035
1NJO|1|0|G|1036
1NJO|1|0|U|1037
1NJO|1|0|U|1038
1NJO|1|0|A|1039
1NJO|1|0|A|1040
1NJO|1|0|G|1041
*
1NJO|1|0|C|1135
1NJO|1|0|G|1136
1NJO|1|0|A|1137
1NJO|1|0|A|1138
1NJO|1|0|A|1139
1NJO|1|0|A|1140
1NJO|1|0|U|1141
1NJO|1|0|G|1142
1NJO|1|0|A|1143
1NJO|1|0|U|1144
1NJO|1|0|C|1145
1NJO|1|0|G|1146
1NJO|1|0|G|1147
1NJO|1|0|G|1148
1NJO|1|0|G|1149
1NJO|1|0|C|1150

Current chains

Chain 0

23S ribosomal RNA

Nearby chains