IL_1NJO_127

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UUGAAAC*GCGGAGGA

Length

15 nucleotides

Bulged bases

1NJO|1|0|G|742

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJO_127 not in the Motif Atlas

Geometric match to IL_8VTW_001

Geometric discrepancy: 0.2391

The information below is about IL_8VTW_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.7

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

1NJO|1|0|U|715
1NJO|1|0|U|716
1NJO|1|0|G|717
1NJO|1|0|A|718
1NJO|1|0|A|719
1NJO|1|0|A|720
1NJO|1|0|C|721
*
1NJO|1|0|G|736
1NJO|1|0|C|737
1NJO|1|0|G|738
1NJO|1|0|G|739
1NJO|1|0|A|740
1NJO|1|0|G|741
1NJO|1|0|G|742
1NJO|1|0|A|743

Current chains

Chain 0

23S ribosomal RNA

Nearby chains