IL_1NJO_128

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GCGGAGAAGC*GUGGAGC

Length

17 nucleotides

Bulged bases

1NJO|1|0|G|1223, 1NJO|1|0|A|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJO|1|0|G|1220
1NJO|1|0|C|1221
1NJO|1|0|G|1222
1NJO|1|0|G|1223
1NJO|1|0|A|1224
1NJO|1|0|G|1225
1NJO|1|0|A|1226
1NJO|1|0|A|1227
1NJO|1|0|G|1228
1NJO|1|0|C|1229
*
1NJO|1|0|G|1246
1NJO|1|0|U|1247
1NJO|1|0|G|1248
1NJO|1|0|G|1249
1NJO|1|0|A|1250
1NJO|1|0|G|1251
1NJO|1|0|C|1252

Current chains

Chain 0

23S ribosomal RNA

Nearby chains