IL_1NJO_129

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GUGAGG*CGCAGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJO_129 not in the Motif Atlas

Geometric match to IL_8ZA4_001

Geometric discrepancy: 0.2595

The information below is about IL_8ZA4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76308.6

Basepair signature

cWW-tSH-tHW-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

1NJO|1|0|G|1369
1NJO|1|0|U|1370
1NJO|1|0|G|1371
1NJO|1|0|A|1372
1NJO|1|0|G|1373
1NJO|1|0|G|1374
*
1NJO|1|0|C|1383
1NJO|1|0|G|1384
1NJO|1|0|C|1385
1NJO|1|0|A|1386
1NJO|1|0|G|1387
1NJO|1|0|C|1388

Current chains

Chain 0

23S ribosomal RNA

Nearby chains