IL_1NJO_131

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGGACG*CCAAGAAAAGC

Length

17 nucleotides

Bulged bases

1NJO|1|0|A|1441, 1NJO|1|0|C|1442, 1NJO|1|0|A|1582, 1NJO|1|0|A|1583

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJO|1|0|G|1438
1NJO|1|0|G|1439
1NJO|1|0|G|1440
1NJO|1|0|A|1441
1NJO|1|0|C|1442
1NJO|1|0|G|1443
*
1NJO|1|0|C|1580
1NJO|1|0|C|1581
1NJO|1|0|A|1582
1NJO|1|0|A|1583
1NJO|1|0|G|1584
1NJO|1|0|A|1585
1NJO|1|0|A|1586
1NJO|1|0|A|1587
1NJO|1|0|A|1588
1NJO|1|0|G|1589
1NJO|1|0|C|1590

Current chains

Chain 0

23S ribosomal RNA

Nearby chains