IL_1NJO_146

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GCGAAAUUCCUUG*CCUGCAC

Length

20 nucleotides

Bulged bases

1NJO|1|0|U|1927, 1NJO|1|0|U|1946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJO|1|0|G|1916
1NJO|1|0|C|1917
1NJO|1|0|G|1918
1NJO|1|0|A|1919
1NJO|1|0|A|1920
1NJO|1|0|A|1921
1NJO|1|0|U|1922
1NJO|1|0|U|1923
1NJO|1|0|C|1924
1NJO|1|0|C|1925
1NJO|1|0|U|1926
1NJO|1|0|U|1927
1NJO|1|0|G|1928
*
1NJO|1|0|C|1944
1NJO|1|0|C|1945
1NJO|1|0|U|1946
1NJO|1|0|G|1947
1NJO|1|0|C|1948
1NJO|1|0|A|1949
1NJO|1|0|C|1950

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 5

RNA ACC(Puromycin)