IL_1NJP_001

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJP_001 not in the Motif Atlas

Homologous match to IL_7RQB_001

Geometric discrepancy: 0.2551

The information below is about IL_7RQB_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.6

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

1NJP|1|0|G|24
1NJP|1|0|U|25
1NJP|1|0|G|26
1NJP|1|0|G|27
1NJP|1|0|A|28
1NJP|1|0|U|29
1NJP|1|0|G|30
*
1NJP|1|0|C|520
1NJP|1|0|U|521
1NJP|1|0|G|522
1NJP|1|0|A|523
1NJP|1|0|A|524
1NJP|1|0|A|525
1NJP|1|0|C|526

Current chains

Chain 0

23S ribosomal RNA

Nearby chains