IL_1NJP_031

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUGUAG*CGAAGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJP_031 not in the Motif Atlas

Homologous match to IL_7A0S_027

Geometric discrepancy: 0.4988

The information below is about IL_7A0S_027

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_81631.1

Basepair signature

cWW-L-R-cSH-R-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

1NJP|1|0|C|870
1NJP|1|0|U|871
1NJP|1|0|G|872
1NJP|1|0|U|873
1NJP|1|0|A|874
1NJP|1|0|G|875
*
1NJP|1|0|C|927
1NJP|1|0|G|928
1NJP|1|0|A|929
1NJP|1|0|A|930
1NJP|1|0|G|931
1NJP|1|0|G|932

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L16