IL_1NJP_040

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUCAGUG*CUCAAG

Length

13 nucleotides

Bulged bases

1NJP|1|0|C|1152, 1NJP|1|0|A|1154

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJP_040 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.4091

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

1NJP|1|0|C|1029
1NJP|1|0|U|1030
1NJP|1|0|C|1031
1NJP|1|0|A|1032
1NJP|1|0|G|1033
1NJP|1|0|U|1034
1NJP|1|0|G|1035
*
1NJP|1|0|C|1150
1NJP|1|0|U|1151
1NJP|1|0|C|1152
1NJP|1|0|A|1153
1NJP|1|0|A|1154
1NJP|1|0|G|1155

Current chains

Chain 0

23S ribosomal RNA

Nearby chains