IL_1NJP_042

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUG*UGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJP_042 not in the Motif Atlas

Geometric match to IL_6OL3_002

Geometric discrepancy: 0.198

The information below is about IL_6OL3_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

1NJP|1|0|G|1045
1NJP|1|0|U|1046
1NJP|1|0|G|1047
*
1NJP|1|0|U|1130
1NJP|1|0|G|1131
1NJP|1|0|C|1132

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain T

GENERAL STRESS PROTEIN CTC