IL_1NJP_044

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAUAGACAG*CGAG

Length

13 nucleotides

Bulged bases

1NJP|1|0|U|1056, 1NJP|1|0|A|1057, 1NJP|1|0|G|1058, 1NJP|1|0|A|1122

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJP|1|0|C|1054
1NJP|1|0|A|1055
1NJP|1|0|U|1056
1NJP|1|0|A|1057
1NJP|1|0|G|1058
1NJP|1|0|A|1059
1NJP|1|0|C|1060
1NJP|1|0|A|1061
1NJP|1|0|G|1062
*
1NJP|1|0|C|1120
1NJP|1|0|G|1121
1NJP|1|0|A|1122
1NJP|1|0|G|1123

Current chains

Chain 0

23S ribosomal RNA

Nearby chains