IL_1NJP_047

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

1NJP|1|0|G|1261

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJP_047 not in the Motif Atlas

Homologous match to IL_4WF9_044

Geometric discrepancy: 0.5017

The information below is about IL_4WF9_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

1NJP|1|0|C|1210
1NJP|1|0|G|1211
1NJP|1|0|U|1212
*
1NJP|1|0|A|1260
1NJP|1|0|G|1261
1NJP|1|0|U|1262
1NJP|1|0|G|1263

Current chains

Chain 0

23S ribosomal RNA

Nearby chains