IL_1NJP_053

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJP_053 not in the Motif Atlas

Homologous match to IL_7RQB_049

Geometric discrepancy: 0.2098

The information below is about IL_7RQB_049

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

1NJP|1|0|A|1275
1NJP|1|0|U|1276
1NJP|1|0|G|1277
1NJP|1|0|A|1278
1NJP|1|0|G|1279
1NJP|1|0|U|1280
1NJP|1|0|A|1281
1NJP|1|0|A|1282
*
1NJP|1|0|U|1994
1NJP|1|0|G|1995
1NJP|1|0|A|1996
1NJP|1|0|A|1997
1NJP|1|0|A|1998
1NJP|1|0|U|1999
1NJP|1|0|U|2000

Current chains

Chain 0

23S ribosomal RNA

Nearby chains