IL_1NJP_076

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGCCAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

1NJP|1|0|G|1790, 1NJP|1|0|C|1792, 1NJP|1|0|C|1808, 1NJP|1|0|U|1812

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJP_076 not in the Motif Atlas

Homologous match to IL_4WF9_069

Geometric discrepancy: 0.3406

The information below is about IL_4WF9_069

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

1NJP|1|0|U|1789
1NJP|1|0|G|1790
1NJP|1|0|C|1791
1NJP|1|0|C|1792
1NJP|1|0|A|1793
1NJP|1|0|A|1794
1NJP|1|0|C|1795
*
1NJP|1|0|G|1805
1NJP|1|0|G|1806
1NJP|1|0|A|1807
1NJP|1|0|C|1808
1NJP|1|0|G|1809
1NJP|1|0|U|1810
1NJP|1|0|A|1811
1NJP|1|0|U|1812
1NJP|1|0|A|1813

Current chains

Chain 0

23S ribosomal RNA

Nearby chains