IL_1NJP_086

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GACGA*UCUAUC

Length

11 nucleotides

Bulged bases

1NJP|1|0|C|2038, 1NJP|1|0|C|2591, 1NJP|1|0|U|2592

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJP|1|0|G|2036
1NJP|1|0|A|2037
1NJP|1|0|C|2038
1NJP|1|0|G|2039
1NJP|1|0|A|2040
*
1NJP|1|0|U|2590
1NJP|1|0|C|2591
1NJP|1|0|U|2592
1NJP|1|0|A|2593
1NJP|1|0|U|2594
1NJP|1|0|C|2595

Current chains

Chain 0

23S ribosomal RNA

Nearby chains