IL_1NJP_096

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCGUAG*CC

Length

8 nucleotides

Bulged bases

1NJP|1|0|G|2095, 1NJP|1|0|U|2096, 1NJP|1|0|A|2097

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJP_096 not in the Motif Atlas

Geometric match to IL_5TBW_119

Geometric discrepancy: 0.2801

The information below is about IL_5TBW_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

1NJP|1|0|G|2093
1NJP|1|0|C|2094
1NJP|1|0|G|2095
1NJP|1|0|U|2096
1NJP|1|0|A|2097
1NJP|1|0|G|2103
*
1NJP|1|0|C|2161
1NJP|1|0|C|2162

Current chains

Chain 0

23S ribosomal RNA

Nearby chains