IL_1NJP_125

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGUUAAG*CGAAAAUGAUCGGGGC

Length

23 nucleotides

Bulged bases

1NJP|1|0|U|1037, 1NJP|1|0|A|1138

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJP_125 not in the Motif Atlas

Geometric match to IL_7A0S_037

Geometric discrepancy: 0.298

The information below is about IL_7A0S_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50715.4

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

Number of instances in this motif group

4

Unit IDs

1NJP|1|0|G|1035
1NJP|1|0|G|1036
1NJP|1|0|U|1037
1NJP|1|0|U|1038
1NJP|1|0|A|1039
1NJP|1|0|A|1040
1NJP|1|0|G|1041
*
1NJP|1|0|C|1135
1NJP|1|0|G|1136
1NJP|1|0|A|1137
1NJP|1|0|A|1138
1NJP|1|0|A|1139
1NJP|1|0|A|1140
1NJP|1|0|U|1141
1NJP|1|0|G|1142
1NJP|1|0|A|1143
1NJP|1|0|U|1144
1NJP|1|0|C|1145
1NJP|1|0|G|1146
1NJP|1|0|G|1147
1NJP|1|0|G|1148
1NJP|1|0|G|1149
1NJP|1|0|C|1150

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L16