IL_1NJP_127

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UUGAAAC*GCGGAGGA

Length

15 nucleotides

Bulged bases

1NJP|1|0|G|742

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJP_127 not in the Motif Atlas

Geometric match to IL_8VTW_001

Geometric discrepancy: 0.2396

The information below is about IL_8VTW_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.7

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

1NJP|1|0|U|715
1NJP|1|0|U|716
1NJP|1|0|G|717
1NJP|1|0|A|718
1NJP|1|0|A|719
1NJP|1|0|A|720
1NJP|1|0|C|721
*
1NJP|1|0|G|736
1NJP|1|0|C|737
1NJP|1|0|G|738
1NJP|1|0|G|739
1NJP|1|0|A|740
1NJP|1|0|G|741
1NJP|1|0|G|742
1NJP|1|0|A|743

Current chains

Chain 0

23S ribosomal RNA

Nearby chains