IL_1NJP_133

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGAACUUUG*CUGUC

Length

14 nucleotides

Bulged bases

1NJP|1|0|G|1975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJP_133 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.3473

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

1NJP|1|0|G|1683
1NJP|1|0|G|1684
1NJP|1|0|A|1685
1NJP|1|0|A|1686
1NJP|1|0|C|1687
1NJP|1|0|U|1688
1NJP|1|0|U|1689
1NJP|1|0|U|1690
1NJP|1|0|G|1691
*
1NJP|1|0|C|1973
1NJP|1|0|U|1974
1NJP|1|0|G|1975
1NJP|1|0|U|1976
1NJP|1|0|C|1977

Current chains

Chain 0

23S ribosomal RNA

Nearby chains