IL_1NJP_141

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGUG*CUC

Length

7 nucleotides

Bulged bases

1NJP|1|0|G|752

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJP_141 not in the Motif Atlas

Homologous match to IL_9DFE_020

Geometric discrepancy: 0.4556

The information below is about IL_9DFE_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

1NJP|1|0|G|751
1NJP|1|0|G|752
1NJP|1|0|U|753
1NJP|1|0|G|754
*
1NJP|1|0|C|769
1NJP|1|0|U|770
1NJP|1|0|C|771

Current chains

Chain 0

23S ribosomal RNA

Nearby chains