IL_1NJP_146

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCGAAAUUCCUUG*CCUGCAC

Length

20 nucleotides

Bulged bases

1NJP|1|0|U|1927, 1NJP|1|0|U|1946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJP|1|0|G|1916
1NJP|1|0|C|1917
1NJP|1|0|G|1918
1NJP|1|0|A|1919
1NJP|1|0|A|1920
1NJP|1|0|A|1921
1NJP|1|0|U|1922
1NJP|1|0|U|1923
1NJP|1|0|C|1924
1NJP|1|0|C|1925
1NJP|1|0|U|1926
1NJP|1|0|U|1927
1NJP|1|0|G|1928
*
1NJP|1|0|C|1944
1NJP|1|0|C|1945
1NJP|1|0|U|1946
1NJP|1|0|G|1947
1NJP|1|0|C|1948
1NJP|1|0|A|1949
1NJP|1|0|C|1950

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 5

tRNA acceptor stem mimic