IL_1OND_031

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAG*CUCC

Length

7 nucleotides

Bulged bases

1OND|1|0|C|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1OND_031 not in the Motif Atlas

Geometric match to IL_4PKD_001

Geometric discrepancy: 0.2507

The information below is about IL_4PKD_001

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

1OND|1|0|G|875
1OND|1|0|A|876
1OND|1|0|G|877
*
1OND|1|0|C|924
1OND|1|0|U|925
1OND|1|0|C|926
1OND|1|0|C|927

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains