IL_1OND_040

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

1OND|1|0|U|1044

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1OND_040 not in the Motif Atlas

Homologous match to IL_7RQB_041

Geometric discrepancy: 0.2779

The information below is about IL_7RQB_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_43275.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

1OND|1|0|G|1042
1OND|1|0|A|1043
1OND|1|0|U|1044
1OND|1|0|G|1045
*
1OND|1|0|C|1132
1OND|1|0|G|1133
1OND|1|0|C|1134

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains