IL_1OND_042

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAUAGACAG*CGAG

Length

13 nucleotides

Bulged bases

1OND|1|0|U|1056, 1OND|1|0|A|1057, 1OND|1|0|G|1058, 1OND|1|0|A|1122

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1OND|1|0|C|1054
1OND|1|0|A|1055
1OND|1|0|U|1056
1OND|1|0|A|1057
1OND|1|0|G|1058
1OND|1|0|A|1059
1OND|1|0|C|1060
1OND|1|0|A|1061
1OND|1|0|G|1062
*
1OND|1|0|C|1120
1OND|1|0|G|1121
1OND|1|0|A|1122
1OND|1|0|G|1123

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains