IL_1OND_072

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGUAAC*GAAGAAG

Length

13 nucleotides

Bulged bases

1OND|1|0|G|1716

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1OND_072 not in the Motif Atlas

Homologous match to IL_4WF9_066

Geometric discrepancy: 0.256

The information below is about IL_4WF9_066

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

11

Unit IDs

1OND|1|0|C|1703
1OND|1|0|G|1704
1OND|1|0|U|1705
1OND|1|0|A|1706
1OND|1|0|A|1707
1OND|1|0|C|1708
*
1OND|1|0|G|1713
1OND|1|0|A|1714
1OND|1|0|A|1715
1OND|1|0|G|1716
1OND|1|0|A|1717
1OND|1|0|A|1718
1OND|1|0|G|1719

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains