IL_1OND_109

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

1OND|1|0|G|2555, 1OND|1|0|A|2556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1OND_109 not in the Motif Atlas

Homologous match to IL_7A0S_089

Geometric discrepancy: 0.1437

The information below is about IL_7A0S_089

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

1OND|1|0|C|2489
1OND|1|0|U|2490
1OND|1|0|C|2491
*
1OND|1|0|G|2553
1OND|1|0|C|2554
1OND|1|0|G|2555
1OND|1|0|A|2556
1OND|1|0|G|2557

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain Z

50S ribosomal protein L32