IL_1OND_126

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGUUAAG*CGAAAAUGAUCGGGGC

Length

23 nucleotides

Bulged bases

1OND|1|0|U|1037, 1OND|1|0|A|1138, 1OND|1|0|U|1141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1OND_126 not in the Motif Atlas

Geometric match to IL_7A0S_037

Geometric discrepancy: 0.237

The information below is about IL_7A0S_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50715.4

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

Number of instances in this motif group

4

Unit IDs

1OND|1|0|G|1035
1OND|1|0|G|1036
1OND|1|0|U|1037
1OND|1|0|U|1038
1OND|1|0|A|1039
1OND|1|0|A|1040
1OND|1|0|G|1041
*
1OND|1|0|C|1135
1OND|1|0|G|1136
1OND|1|0|A|1137
1OND|1|0|A|1138
1OND|1|0|A|1139
1OND|1|0|A|1140
1OND|1|0|U|1141
1OND|1|0|G|1142
1OND|1|0|A|1143
1OND|1|0|U|1144
1OND|1|0|C|1145
1OND|1|0|G|1146
1OND|1|0|G|1147
1OND|1|0|G|1148
1OND|1|0|G|1149
1OND|1|0|C|1150

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains