IL_1OND_127

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGC*GACC

Length

7 nucleotides

Bulged bases

1OND|1|0|A|455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1OND_127 not in the Motif Atlas

Geometric match to IL_7Y2B_003

Geometric discrepancy: 0.236

The information below is about IL_7Y2B_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

1OND|1|0|G|35
1OND|1|0|G|36
1OND|1|0|C|37
*
1OND|1|0|G|454
1OND|1|0|A|455
1OND|1|0|C|456
1OND|1|0|C|457

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains