IL_1OND_132

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

AGGGACG*CCAAGAAAAGCU

Length

19 nucleotides

Bulged bases

1OND|1|0|A|1441, 1OND|1|0|C|1442, 1OND|1|0|A|1582, 1OND|1|0|A|1583

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1OND|1|0|A|1437
1OND|1|0|G|1438
1OND|1|0|G|1439
1OND|1|0|G|1440
1OND|1|0|A|1441
1OND|1|0|C|1442
1OND|1|0|G|1443
*
1OND|1|0|C|1580
1OND|1|0|C|1581
1OND|1|0|A|1582
1OND|1|0|A|1583
1OND|1|0|G|1584
1OND|1|0|A|1585
1OND|1|0|A|1586
1OND|1|0|A|1587
1OND|1|0|A|1588
1OND|1|0|G|1589
1OND|1|0|C|1590
1OND|1|0|U|1591

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains